Fossil Insect Traces Reveal Ancient Climate, Entrapment, and Fossilization at La Brea Tar Pits

The La Brea Tar Pits have stirred the imaginations of scientists and the public alike for over a century. But the amount of time it took for ancient animals to become buried in asphalt after enduring their gruesome deaths has remained a mystery. Recent forensic investigations, led by Anna R. Holden of the Natural History Museum of Los Angeles County (NHM) and colleagues, reveal new insights into fossilization and the prevailing climate at the Rancho La Brea Tar Pits toward the end of the last Ice Age.

This image shows a horse sesamoid (foot bone) riddled with insect damage. The bone, between 33,000-36,000 years old, is housed at the Page Museum at the La Brea Tar Pits. (Credit: Page Museum at the La Brea Tar Pits)

This image shows a horse sesamoid (foot bone) riddled with insect damage. The bone, between 33,000-36,000 years old, is housed at the Page Museum at the La Brea Tar Pits. (Credit: Page Museum at the La Brea Tar Pits)

The paper, entitled “Paleoecological and taphonomic implications of insect-damaged Pleistocene vertebrate remains from Rancho La Brea, southern California,” is published in the journal PLoS ONE.

The first step was to identify the insect traces. Holden and colleagues determined that different larval beetles were responsible for the exceptionally preserved traces on the bones of ancient mammals. By identifying those traces and researching the biology of the trace-maker, the team was able to pinpoint the climatic conditions and the minimum number of days it took for some of the carcasses to become submerged in the entrapping asphalt. Even after 10,000-60,000 years, the traces provide clear evidence that submergence took at least 17-20 weeks and occurred during warm to hot weather.

Holden conducted the study with paleontologist Dr. John M. Harris, Chief Curator of the Page Museum at the La Brea Tar Pits, and Robert M. Timm, from Kansas University, who manages a dermestid beetle colony for research specimen preparation. They fed bones to insect colonies and used forensic entomology to decipher fossil insect traces. Because the insects that made the fossil traces still live today, the team was able to link the climate restrictions of these culprits to late Ice Age environmental conditions. “These are rare and precious fossils because they provide a virtual snapshot of a natural drama that unfolded thousands of years ago in Los Angeles,” Holden said.

Aside from adding to the documented list of insects that eat bone, research by Holden et al. also sheds light on the conditions under which such insects will feed, and why mammalian herbivores offer a great setting for larval development. Although carnivorans vastly outnumber the amount of mammalian herbivorans excavated from the tar pits, no insect damage was found on their bones. The team believes that the thicker skin surrounding mammalian herbivore feet dried out and provided a stable, protected, and humid sub-environment complete with the right balance of tendons, muscle and fat for dermestid and tenebrionid larvae.

These unique specimens, housed at the Page Museum, were recovered from multiple asphalt deposits from excavations that took place over the last century and continue today. “Most people associate the tar pits with research on saber-toothed cats and mammoths.” Holden said. “But we show that the insects offer some the most valuable clues for our ongoing efforts to reconstruct Los Angeles’s prehistoric environment.”

The Giant Cretaceous Coelacanth (Actinistia, Sarcopterygii) Megalocoelacanthus dobiei Schwimmer, Stewart & Williams, 1994, and Its Bearing on Latimerioidei Interrelationships

We present a redescription of Megalocoelacanthus dobiei, a giant fossil coelacanth from Upper Cretaceous strata of North America. Megalocoelacanthus has been previously described on the basis of composite material that consisted of isolated elements. Consequently, many aspects of its anatomy have remained unknown as well as its phylogenetic relationships with other coelacanths. Previous studies have suggested that Megalocoelacanthus is closer to Latimeria and Macropoma than to Mawsonia. However, this assumption was based only on the overall similarity of few anatomical features, rather than on a phylogenetic character analysis. A new, and outstandingly preserved specimen from the Niobrara Formation in Kansas allows the detailed description of the skull of Megalocoelacanthus and elucidation of its phylogenetic relationships with other coelacanths. Although strongly flattened, the skull and jaws are well preserved and show many derived features that are shared with Latimeriidae such as Latimeria, Macropoma and Libys. Notably, the parietonasal shield is narrow and flanked by very large, continuous vacuities forming the supraorbital sensory line canal. Such an unusual morphology is also known in Libys. Some other features of Megalocoelacanthus, such as its large size and the absence of teeth are shared with the mawsoniid genera Mawsonia and Axelrodichthys. Our cladistic analysis supports the sister-group relationship of Megalocoelacanthus and Libys within Latimeriidae. This topology suggests that toothless, large-sized coelacanths evolved independently in both Latimeriidae and Mawsoniidae during the Mesozoic. Based on previous topologies and on ours, we then review the high-level taxonomy of Latimerioidei and propose new systematic phylogenetic definitions.

Megalocoelacanthus dobiei Schwimmer, Stewart & Williams, 1994, AMNH FF 20267 from lower Campanian of the Niobrara Formation. show more  Ethmosphenoid portion of the skull in right lateral view. Abbreviations: ant.com.so.s.c, anterior commissure of supraorbital sensory line canal; ant.pr, antotic process; a.w.Par, ascending wing of parasphenoid; Bsph, basisphenoid; bucc.can, buccal canal; gr.j.v, groove for jugular vein; L.e, lateral ethmoid; L.r, lateral rostral; Na, nasal; Pa.a, anterior parietal; Pa.p, posterior parietal; Par, parasphenoid; pi, pillar; pr.con, processus connectens; sph.c, sphenoid condyle; So, supraorbital series; so.s.c, supraorbital sensory line canal; v.l.fo, ventrolateral fossa; ?v.pr.Pa, ventral (descending) process of the parietal. Scale bar = 10 cm.  doi:10.1371/journal.pone.0049911.g002

Megalocoelacanthus dobiei Schwimmer, Stewart & Williams, 1994, AMNH FF 20267 from lower Campanian of the Niobrara Formation.
Ethmosphenoid portion of the skull in right lateral view. Abbreviations: ant.com.so.s.c, anterior commissure of supraorbital sensory line canal; ant.pr, antotic process; a.w.Par, ascending wing of parasphenoid; Bsph, basisphenoid; bucc.can, buccal canal; gr.j.v, groove for jugular vein; L.e, lateral ethmoid; L.r, lateral rostral; Na, nasal; Pa.a, anterior parietal; Pa.p, posterior parietal; Par, parasphenoid; pi, pillar; pr.con, processus connectens; sph.c, sphenoid condyle; So, supraorbital series; so.s.c, supraorbital sensory line canal; v.l.fo, ventrolateral fossa; ?v.pr.Pa, ventral (descending) process of the parietal. Scale bar = 10 cm.
doi:10.1371/journal.pone.0049911.g002

 

Megalocoelacanthus dobiei Schwimmer, Stewart & Williams, 1994, AMNH FF 20267 from lower Campanian of the Niobrara Formation. show more  Ethmosphenoid portion of the skull in left lateral view. Abbreviations: ant.pr, antotic process; a.w.Par, ascending wing of parasphenoid; Bsph, basisphenoid; bucc.can, buccal canal; f.v.nas-b.can, foramen for ventral branch of naso-basal canal; gr.j.v, groove for jugular vein; io.s.c, infraorbital sensory line canal; L.e, lateral ethmoid; L.r, lateral rostral; Na, nasal; nos.a, anterior nostril; nos.p, posterior nostril; Pa.p, posterior parietal; Par, parasphenoid; pi, pillar; pr.con, processus connectens; sph.c, sphenoid condyle; So, supraorbital series; so.s.c, supraorbital sensory line canal; v.l.fo, ventrolateral fossa; v.pr.L.r, ventral (descending) process of the lateral rostral; ?v.pr.Pa, ventral (descending) process of the parietal. Scale bar = 10 cm.  doi:10.1371/journal.pone.0049911.g003

Megalocoelacanthus dobiei Schwimmer, Stewart & Williams, 1994, AMNH FF 20267 from lower Campanian of the Niobrara Formation.
Ethmosphenoid portion of the skull in left lateral view. Abbreviations: ant.pr, antotic process; a.w.Par, ascending wing of parasphenoid; Bsph, basisphenoid; bucc.can, buccal canal; f.v.nas-b.can, foramen for ventral branch of naso-basal canal; gr.j.v, groove for jugular vein; io.s.c, infraorbital sensory line canal; L.e, lateral ethmoid; L.r, lateral rostral; Na, nasal; nos.a, anterior nostril; nos.p, posterior nostril; Pa.p, posterior parietal; Par, parasphenoid; pi, pillar; pr.con, processus connectens; sph.c, sphenoid condyle; So, supraorbital series; so.s.c, supraorbital sensory line canal; v.l.fo, ventrolateral fossa; v.pr.L.r, ventral (descending) process of the lateral rostral; ?v.pr.Pa, ventral (descending) process of the parietal. Scale bar = 10 cm.
doi:10.1371/journal.pone.0049911.g003

 

Megalocoelacanthus dobiei Schwimmer, Stewart & Williams, 1994, AMNH FF 20267 from lower Campanian of the Niobrara Formation. Isolated snout. show more  A, right anterolateral view; B, posterior view. Abbreviations: ant.ros, anterior opening for the rostral organ; c.nos.a, canal for the anterior nostril; d.l.Pmx, dorsal lamina of the premaxilla; f.a.n.c, anterior foramen of the nasal capsule; L.r, lateral rostral; m.p.s.c, median pore for the sensory line canal; n.c, nasal capsule; nos.a, anterior nostril; Pmx, premaxilla. Scale bar = 1 cm.  doi:10.1371/journal.pone.0049911.g004

Megalocoelacanthus dobiei Schwimmer, Stewart & Williams, 1994, AMNH FF 20267 from lower Campanian of the Niobrara Formation. Isolated snout.
A, right anterolateral view; B, posterior view. Abbreviations: ant.ros, anterior opening for the rostral organ; c.nos.a, canal for the anterior nostril; d.l.Pmx, dorsal lamina of the premaxilla; f.a.n.c, anterior foramen of the nasal capsule; L.r, lateral rostral; m.p.s.c, median pore for the sensory line canal; n.c, nasal capsule; nos.a, anterior nostril; Pmx, premaxilla. Scale bar = 1 cm.
doi:10.1371/journal.pone.0049911.g004

 

Citation: Dutel H, Maisey JG, Schwimmer DR, Janvier P, Herbin M, et al. (2012) The Giant Cretaceous Coelacanth (Actinistia, Sarcopterygii) Megalocoelacanthus dobiei Schwimmer, Stewart & Williams, 1994, and Its Bearing on Latimerioidei Interrelationships. PLoS ONE 7(11): e49911. doi:10.1371/journal.pone.0049911

Editor: Daphne Soares, University of Maryland, United States of America

 

 

 

After Major Earthquake: A Global Murmur, Then Unusual Silence

In the global aftershock zone that followed the major April 2012 Indian Ocean earthquake, seismologists noticed an unusual pattern. The magnitude (M) 8.6 earthquake, a strike-slip event at intraoceanic tectonic plates, caused global seismic rates of M≥4.5 to rise for several days, even at distances thousands of kilometers from the mainshock site. However, the rate of M≥6.5 seismic activity subsequently dropped to zero for the next 95 days.

This period of quiet, without a large quake, has been a rare event in the past century. So why did this period of quiet occur?

In his research presentation, Fred Pollitz of the U.S. Geological Survey suggests that the Indian Ocean earthquake caused short-term dynamic stressing of a global faulting system. Across the planet, there are faults that are “close to failure” and ready to rupture. It may be, suggests Pollitz and his colleagues, that a large quake encourages short-term triggering of these close-to-failure faults but also relieves some of the stress that has built up along these faults. Large magnitude events would not occur until tectonic movement loads stress back on to the faults at the ready-to-fail levels they reached before the mainshock.

Using a statistical model of global seismicity, Pollitz and his colleagues show that a transient seismic perturbation of the size of the April 2012 global aftershock would inhibit rupture in 88 percent of their possible M≥6.5 earthquake fault sources over the next 95 days, regardless of how close they were to failure beforehand.

How ‘Parrot Dinosaur’ Switched from Four Feet to Two as It Grew

Tracking the growth of dinosaurs and how they changed as they grew is difficult. Using a combination of biomechanical analysis and bone histology, palaeontologists from Beijing, Bristol, and Bonn have shown how one of the best-known dinosaurs switched from four feet to two as it grew.

Psittacosaurus, the ‘parrot dinosaur’ is known from more than 1000 specimens from the Cretaceous, 100 million years ago, of China and other parts of east Asia. As part of his PhD thesis at the University of Bristol, Qi Zhao, now on the staff of the Institute for Vertebrate Paleontology in Beijing, carried out the intricate study on bones of babies, juveniles and adults.

A Psittacosaurus skeleton cast in the permanent collection of The Children’s Museum of Indianapolis. (Credit: Photo by Michelle Pemberton, via Wikimedia Commons (Creative Commons license))

A Psittacosaurus skeleton cast in the permanent collection of The Children’s Museum of Indianapolis. (Credit: Photo by Michelle Pemberton, via Wikimedia Commons (Creative Commons license))

Dr Zhao said: “Some of the bones from baby Psittacosaurus were only a few millimetres across, so I had to handle them extremely carefully to be able to make useful bone sections. I also had to be sure to cause as little damage to these valuable specimens as possible.”

With special permission from the Beijing Institute, Zhao sectioned two arm and two leg bones from 16 individual dinosaurs, ranging in age from less than one year to 10 years old, or fully-grown. He did the intricate sectioning work in a special palaeohistology laboratory in Bonn, Germany,

The one-year-olds had long arms and short legs, and scuttled about on all fours soon after hatching. The bone sections showed that the arm bones were growing fastest when the animals were ages one to three years. Then, from four to six years, arm growth slowed down, and the leg bones showed a massive growth spurt, meaning they ended up twice as long as the arms, necessary for an animal that stood up on its hind legs as an adult.

Professor Xing Xu of the Beijing Institute, one of Dr Zhao’s thesis supervisors, said: “This remarkable study, the first of its kind, shows how much information is locked in the bones of dinosaurs. We are delighted the study worked so well, and see many ways to use the new methods to understand even more about the astonishing lives of the dinosaurs.”

Professor Mike Benton of the University of Bristol, Dr Zhao’s other PhD supervisor, said: “These kinds of studies can also throw light on the evolution of a dinosaur like Psittacosaurus. Having four-legged babies and juveniles suggests that at some time in their ancestry, both juveniles and adults were also four-legged, and Psittacosaurus and dinosaurs in general became secondarily bipedal.”

Large Dead Zone Forming in the Gulf

Ocean experts had predicted a large “dead zone” area in the Gulf of Mexico this year, and according to the results from a Texas A&M University researcher just back from studying the region, those predictions appear to be right on target.

Steve DiMarco, professor of oceanography and one of the world’s leading experts on the dead zone, says he and a Texas A&M team surveyed areas off the Texas-Louisiana coast last week and found large areas of oxygen-depleted water — an area covering roughly 3,100 square miles, or about the size of Delaware and Rhode Island combined.

“We found hypoxia (oxygen-depleted water) just about everywhere we looked,” DiMarco reports.

“The most intense area is where you would expect it — off the Louisiana coast south of Atchafalaya Bay and Grande Isle, La. But we also found significant amounts off High Island and near Galveston. The farther south we went, the less we found hypoxia in the water column, but we still found plenty of depleted oxygen waters up to just west of Freeport.

“There is no doubt there is a lot of hypoxia in the Gulf this year.”

Hypoxia occurs when oxygen levels in seawater drop to dangerously low levels, and persistent hypoxia can potentially result in fish kills and harm marine life, thereby creating a “dead zone” in that particular area.

Such low levels of oxygen are believed to be caused by nutrient pollution from farm fertilizers as they empty into rivers such as the Mississippi and eventually into the Gulf, or by soil erosion or discharge from sewage treatment plants. The size of the zone has been shown to be influenced by the nutrient runoff, volume of freshwater discharged, and prevailing winds, which controls the freshwater river plume’s movement.

The Mississippi is the largest river in the United States, draining 40 percent of the land area of the country. It also accounts for almost 90 percent of the freshwater runoff into the Gulf of Mexico.

Last year, with much of the Midwest suffering through its worst drought in 100 years, the dead zone measured only 1,580 square miles.

DiMarco’s research on the dead zone is supported by the National Oceanic and Atmospheric Association (NOAA), as part of its long-term commitment to advancing the science to inform management practices aimed at mitigating the hypoxic zone.

“While we await additional data from the entire summer, these early findings start to validate our prediction that we could see one of the largest dead zones ever in the Gulf of Mexico this July,” said Robert Magnien, Ph.D., center director at NOAA’s National Centers for Coastal Ocean Science.

“This is further confirmation of the link between upstream nutrient management decisions and the critical habitats and living resources in the Gulf.”

DiMarco has made 28 research trips to investigate the dead zone since 2003. His cruise this year carried 10 investigators from Texas A&M and Texas A&M at Galveston and included two research scientists, Matthew Howard and Ruth Perry, five graduate students, Laura Harred, Jordan Young, Yan Zhao, Heather Zimmerle, and Nicole Zuck, and two marine technicians, Eddie Webb and Andrew Dancer (Geochemical and Environmental Research Group). On shore investigators include Lisa Campbell, Wilford Gardner, Shari Yvon-Lewis, and Ethan Grossman , all from Texas A&M, and Antonietta Quigg from Texas A&M-Galveston.

Texas A&M professor Steve DiMarco taking water samples. (Credit: Texas A&M University)

Texas A&M professor Steve DiMarco taking water samples. (Credit: Texas A&M University)

DiMarco says the size of the dead zone off coastal Louisiana has been routinely monitored since 1985. Previous research has also shown that nitrogen levels in the Gulf related to human activities have tripled over the past 50 years.

Research Helps Paint Finer Picture of Massive 1700 Earthquake

In 1700, a massive earthquake struck the west coast of North America. Though it was powerful enough to cause a tsunami as far as Japan, a lack of local documentation has made studying this historic event challenging.

Now, researchers from the University of Pennsylvania have helped unlock this geological mystery using a fossil-based technique. Their work provides a finer-grained portrait of this earthquake and the changes in coastal land level it produced, enabling modelers to better prepare for future events.

Benjamin Horton and Andrea Hawkes in the field. (Credit: Image courtesy of University of Pennsylvania)

Benjamin Horton and Andrea Hawkes in the field. (Credit: Image courtesy of University of Pennsylvania)

Penn’s team includes Benjamin Horton, associate professor and director of the Sea Level Research Laboratory in the Department of Earth and Environmental Science in the School of Arts and Sciences, along with then lab members Simon Engelhart and Andrea Hawkes. They collaborated with researchers from Canada’s University of Victoria, the National Taiwan University, the Geological Survey of Canada and the United States Geological Survey.

The research was published in the Journal of Geophysical Research: Solid Earth.

The Cascadia Subduction Zone runs along the Pacific Northwest coast of the United States to Vancouver Island in Canada. This major fault line is capable of producing megathrust earthquakes 9.0 or higher, though, due to a dearth of observations or historical records, this trait was only discovered within the last several decades from geology records. The Lewis and Clark expedition did not make the first extensive surveys of the region until more than 100 years later, and contemporaneous aboriginal accounts were scarce and incomplete.

The 1700 Cascadia event was better documented in Japan than in the Americas. Records of the “orphan tsunami” — so named because its “parent” earthquake was too far away to be felt — gave earth scientists hints that this subduction zone was capable of such massive seismic activity. Geological studies provided information about the earthquake, but many critical details remained lost to history.

“Previous research had determined the timing and the magnitude, but what we didn’t know was how the rupture happened,” Horton said. “Did it rupture in one big long segment, more than a thousand kilometers, or did it rupture in parcels?”

To provide a clearer picture of how the earthquake occurred, Horton and his colleagues applied a technique they have used in assessing historic sea-level rise. They traveled to various sites along the Cascadia subduction zone, taking core samples from up and down the coast and working with local researchers who donated pre-existing data sets. The researchers’ targets were microscopic fossils known as foraminifera. Through radiocarbon dating and an analysis of different species’ positions with the cores over time, the researchers were able to piece together a historical picture of the changes in land and sea level along the coastline. The research revealed how much the coast suddenly subsided during the earthquake. This subsidence was used to infer how much the tectonic plates moved during the earthquake.

“What we were able to show for the first time is that the rupture of Cascadia was heterogeneous, making it similar to what happened with the recent major earthquakes in Japan, Chile and Sumatra,” Horton said.

This level of regional detail for land level changes is critical for modeling and disaster planning.

“It’s only when you have that data that you can start to build accurate models of earthquake ruptures and tsunami inundation,” Horton said. “There were areas of the west coast of the United States that were more susceptible to larger coastal subsidence than others.”

The Cascadia subduction zone is of particular interest to geologists and coastal managers because geological evidence points to recurring seismic activity along the fault line, with intervals between 300 and 500 years. With the last major event occurring in 1700, another earthquake could be on the horizon. A better understanding of how such an event might unfold has the potential to save lives.

“The next Cascadia earthquake has the potential to be the biggest natural disaster that the Unites States will have to come to terms with — far bigger than Sandy or even Katrina,” Horton said. “It would happen with very little warning; some areas of Oregon will have less than 20 minutes to evacuate before a large tsunami will inundate the coastline like in Sumatra in 2004 and Japan in 2011.”

The research was supported by the National Science Foundation, the United States Geological Survey and the University of Victoria. Simon Engelhart and Andrea Hawkes are now assistant professors at the University of Rhode Island and the University of North Carolina, respectively. Their co-authors were Pei-Ling Wang of the University of Victoria and National Taiwan University, Kelin Wang of the University of Victoria and the Geological Survey of Canada’s Pacific Geoscience Centre, Alan Nelson of the United States Geological Survey’s Geologic Hazards Science Center and Robert Witter of the United States Geological Survey’s Alaska Science Center.

Location of Upwelling in Earth’s Mantle Discovered to Be Stable

A study published in Nature today shares the discovery that large-scale upwelling within Earth’s mantle mostly occurs in only two places: beneath Africa and the Central Pacific. More importantly, Clinton Conrad, Associate Professor of Geology at the University of Hawaii — Manoa’s School of Ocean and Earth Science and Technology (SOEST) and colleagues revealed that these upwelling locations have remained remarkably stable over geologic time, despite dramatic reconfigurations of tectonic plate motions and continental locations on the Earth’s surface. “For example,” said Conrad, “the Pangaea supercontinent formed and broke apart at the surface, but we think that the upwelling locations in the mantle have remained relatively constant despite this activity.”

Conrad has studied patterns of tectonic plates throughout his career, and has long noticed that the plates were, on average, moving northward. “Knowing this,” explained Conrad, “I was curious if I could determine a single location in the Northern Hemisphere toward which all plates are converging, on average.” After locating this point in eastern Asia, Conrad then wondered if other special points on Earth could characterize plate tectonics. “With some mathematical work, I described the plate tectonic ‘quadrupole’, which defines two points of ‘net convergence’ and two points of ‘net divergence’ of tectonic plate motions.”

When the researchers computed the plate tectonic quadruople locations for present-day plate motions, they found that the net divergence locations were consistent with the African and central Pacific locations where scientists think that mantle upwellings are occurring today. “This observation was interesting and important, and it made sense,” said Conrad. “Next, we applied this formula to the time history of plate motions and plotted the points — I was astonished to see that the points have not moved over geologic time!” Because plate motions are merely the surface expression of the underlying dynamics of the Earth’s mantle, Conrad and his colleagues were able to infer that upwelling flow in the mantle must also remain stable over geologic time. “It was as if I was seeing the ‘ghosts’ of ancient mantle flow patterns, recorded in the geologic record of plate motions!”

Earth’s mantle dynamics govern many aspects of geologic change on the Earth’s surface. This recent discovery that mantle upwelling has remained stable and centered on two locations (beneath Africa and the Central Pacific) provides a framework for understanding how mantle dynamics can be linked to surface geology over geologic time. For example, the researchers can now estimate how individual continents have moved relative to these two upwelling locations. This allows them to tie specific events that are observed in the geologic record to the mantle forces that ultimately caused these events.

This is a diagram showing a slice through the Earth's mantle, cutting across major mantle upwelling locations beneath Africa and the Pacific. (Credit: C. Conrad (UH SOEST))

This is a diagram showing a slice through the Earth’s mantle, cutting across major mantle upwelling locations beneath Africa and the Pacific. (Credit: C. Conrad (UH SOEST))

More broadly, this research opens up a big question for solid earth scientists: What processes cause these two mantle upwelling locations to remain stable within a complex and dynamically evolving system such as the mantle? One notable observation is that the lowermost mantle beneath Africa and the Central Pacific seems to be composed of rock assemblages that are different than the rest of the mantle. Is it possible that these two anomalous regions at the bottom of the mantle are somehow organizing flow patterns for the rest of the mantle? How?

“Answering such questions is important because geologic features such as ocean basins, mountains belts, earthquakes and volcanoes ultimately result from Earth’s interior dynamics,” Conrad described. “Thus, it is important to understand the time-dependent nature of our planet’s interior dynamics in order to better understand the geological forces that affect the planetary surface that is our home.”

The mantle flow framework that can be defined as a result of this study allows geophysicists to predict surface uplift and subsidence patterns as a function of time. These vertical motions of continents and seafloor cause both local and global changes in sea level. In the future, Conrad wants to use this new understanding of mantle flow patterns to predict changes in sea level over geologic time. By comparing these predictions to observations of sea level change, he hopes to develop new constraints on the influence of mantle dynamics on sea level.

A Stepping-Stone for Oxygen On Earth

For most terrestrial life on Earth, oxygen is necessary for survival. But the planet’s atmosphere did not always contain this life-sustaining substance, and one of science’s greatest mysteries is how and when oxygenic photosynthesis — the process responsible for producing oxygen on Earth through the splitting of water molecules — first began. Now, a team led by geobiologists at the California Institute of Technology (Caltech) has found evidence of a precursor photosystem involving manganese that predates cyanobacteria, the first group of organisms to release oxygen into the environment via photosynthesis.

Caltech graduate student Jena Johnson examines a 2.415 billion-year-old rock in South Africa where evidence of an early manganese-oxidizing photosystem was found. (Credit: Caltech)

Caltech graduate student Jena Johnson examines a 2.415 billion-year-old rock in South Africa where evidence of an early manganese-oxidizing photosystem was found. (Credit: Caltech)

The findings, outlined in the June 24 early edition of the Proceedings of the National Academy of Sciences (PNAS), strongly support the idea that manganese oxidation — which, despite the name, is a chemical reaction that does not have to involve oxygen — provided an evolutionary stepping-stone for the development of water-oxidizing photosynthesis in cyanobacteria.

“Water-oxidizing or water-splitting photosynthesis was invented by cyanobacteria approximately 2.4 billion years ago and then borrowed by other groups of organisms thereafter,” explains Woodward Fischer, assistant professor of geobiology at Caltech and a coauthor of the study. “Algae borrowed this photosynthetic system from cyanobacteria, and plants are just a group of algae that took photosynthesis on land, so we think with this finding we’re looking at the inception of the molecular machinery that would give rise to oxygen.”

Photosynthesis is the process by which energy from the sun is used by plants and other organisms to split water and carbon dioxide molecules to make carbohydrates and oxygen. Manganese is required for water splitting to work, so when scientists began to wonder what evolutionary steps may have led up to an oxygenated atmosphere on Earth, they started to look for evidence of manganese-oxidizing photosynthesis prior to cyanobacteria. Since oxidation simply involves the transfer of electrons to increase the charge on an atom — and this can be accomplished using light or O2 — it could have occurred before the rise of oxygen on this planet.

“Manganese plays an essential role in modern biological water splitting as a necessary catalyst in the process, so manganese-oxidizing photosynthesis makes sense as a potential transitional photosystem,” says Jena Johnson, a graduate student in Fischer’s laboratory at Caltech and lead author of the study.

To test the hypothesis that manganese-based photosynthesis occurred prior to the evolution of oxygenic cyanobacteria, the researchers examined drill cores (newly obtained by the Agouron Institute) from 2.415 billion-year-old South African marine sedimentary rocks with large deposits of manganese.

Manganese is soluble in seawater. Indeed, if there are no strong oxidants around to accept electrons from the manganese, it will remain aqueous, Fischer explains, but the second it is oxidized, or loses electrons, manganese precipitates, forming a solid that can become concentrated within seafloor sediments.

“Just the observation of these large enrichments — 16 percent manganese in some samples — provided a strong implication that the manganese had been oxidized, but this required confirmation,” he says.

To prove that the manganese was originally part of the South African rock and not deposited there later by hydrothermal fluids or some other phenomena, Johnson and colleagues developed and employed techniques that allowed the team to assess the abundance and oxidation state of manganese-bearing minerals at a very tiny scale of 2 microns.

“And it’s warranted — these rocks are complicated at a micron scale!” Fischer says. “And yet, the rocks occupy hundreds of meters of stratigraphy across hundreds of square kilometers of ocean basin, so you need to be able to work between many scales — very detailed ones, but also across the whole deposit to understand the ancient environmental processes at work.”

Using these multiscale approaches, Johnson and colleagues demonstrated that the manganese was original to the rocks and first deposited in sediments as manganese oxides, and that manganese oxidation occurred over a broad swath of the ancient marine basin during the entire timescale captured by the drill cores.

“It’s really amazing to be able to use X-ray techniques to look back into the rock record and use the chemical observations on the microscale to shed light on some of the fundamental processes and mechanisms that occurred billions of years ago,” says Samuel Webb, coauthor on the paper and beam line scientist at the SLAC National Accelerator Laboratory at Stanford University, where many of the study’s experiments took place. “Questions regarding the evolution of the photosynthetic pathway and the subsequent rise of oxygen in the atmosphere are critical for understanding not only the history of our own planet, but also the basics of how biology has perfected the process of photosynthesis.”

Once the team confirmed that the manganese had been deposited as an oxide phase when the rock was first forming, they checked to see if these manganese oxides were actually formed before water-splitting photosynthesis or if they formed after as a result of reactions with oxygen. They used two different techniques to check whether oxygen was present. It was not — proving that water-splitting photosynthesis had not yet evolved at that point in time. The manganese in the deposits had indeed been oxidized and deposited before the appearance of water-splitting cyanobacteria. This implies, the researchers say, that manganese-oxidizing photosynthesis was a stepping-stone for oxygen-producing, water-splitting photosynthesis.

“I think that there will be a number of additional experiments that people will now attempt to try and reverse engineer a manganese photosynthetic photosystem or cell,” Fischer says. “Once you know that this happened, it all of a sudden gives you reason to take more seriously an experimental program aimed at asking, ‘Can we make a photosystem that’s able to oxidize manganese but doesn’t then go on to split water? How does it behave, and what is its chemistry?’ Even though we know what modern water splitting is and what it looks like, we still don’t know exactly how it works. There is a still a major discovery to be made to find out exactly how the catalysis works, and now knowing where this machinery comes from may open new perspectives into its function — an understanding that could help target technologies for energy production from artificial photosynthesis. ”

Next up in Fischer’s lab, Johnson plans to work with others to try and mutate a cyanobacteria to “go backwards” and perform manganese-oxidizing photosynthesis. The team also plans to investigate a set of rocks from western Australia that are similar in age to the samples used in the current study and may also contain beds of manganese. If their current study results are truly an indication of manganese-oxidizing photosynthesis, they say, there should be evidence of the same processes in other parts of the world.

“Oxygen is the backdrop on which this story is playing out on, but really, this is a tale of the evolution of this very intense metabolism that happened once — an evolutionary singularity that transformed the planet,” Fischer says. “We’ve provided insight into how the evolution of one of these remarkable molecular machines led up to the oxidation of our planet’s atmosphere, and now we’re going to follow up on all angles of our findings.”

Funding for the research outlined in the PNAS paper, titled “Manganese-oxidizing photosynthesis before the rise of cyanobacteria,” was provided by the Agouron Institute, NASA’s Exobiology Branch, the David and Lucile Packard Foundation, and the National Science Foundation Graduate Research Fellowship program. Joseph Kirschvink, Nico and Marilyn Van Wingen Professor of Geobiology at Caltech, also contributed to the study along with Katherine Thomas and Shuhei Ono from the Massachusetts Institute of Technology.

Pareiasaur: Bumpy Beast Was a Desert Dweller

During the Permian era, Earth was dominated by a single supercontinent called Pangea — “All-Earth.” Animal and plant life dispersed broadly across this land, as documented by identical fossil species found on multiple modern continents. But a new study published in the Journal of Vertebrate Paleontology supports the idea that there was an isolated desert in the middle of Pangea with a fauna all its own.

Artist's rendering of the pareiasaur Bunostegos, a cow-sized, plant-eating reptile that roamed the ancient central desert of Pangea over 250 million years ago. (Credit: Illustration by Marc Boulay.)

Artist’s rendering of the pareiasaur Bunostegos, a cow-sized, plant-eating reptile that roamed the ancient central desert of Pangea over 250 million years ago. (Credit: Illustration by Marc Boulay.)

Roaming this desert in what is now northern Niger was a very distinctive creature known as a pareiasaur. Pareiasaurs were large, herbivorous reptiles that were common across Pangea during the Middle and Late Permian, about 266-252 million years ago. “Imagine a cow-sized, plant-eating reptile with a knobby skull and bony armor down its back,” said lead author Linda Tsuji. The newly discovered fossils belong to the aptly-named genus Bunostegos, which means “knobby [skull] roof.”

Most pareiasaurs had bony knobs on their skulls, but Bunostegos sported the largest, most bulbous ones ever discovered. In life, these were probably skin-covered horns like those on the heads of modern giraffes. Although at first blush these features seem to suggest that Bunostegos was an evolutionarily advanced pareiasaur, it also had many primitive characteristics. Tsuji’s analysis showed that Bunostegos was actually more closely related to older and more primitive pareiasaurs, leading to two conclusions: first, that its knobby noggin was the result of convergent evolution, and second, that its genealogical lineage had been isolated for millions of years.

So how do you isolate a population of cow-sized reptiles? Though there were no fences in the Permian, climatic conditions conspired to corral Bunostegos — along with several other reptiles, amphibians, and plants — and keep them constrained to the central area of the supercontinent. “Our work supports the theory that central Pangea was climatically isolated, allowing a unique relict fauna to persist into the Late Permian,” said Christian Sidor, another author of the paper. This is surprising because areas outside this central region show fossil evidence of regular faunal interchange.

Geological data also show that central Pangea was hyperarid (extremely dry), effectively discouraging some animals from passing through, while keeping those within from venturing out. The long period of isolation under these parched conditions gave Bunostegos lineage time to evolve its unique anatomical features.

Paleontologist Gabe Bever, who was not involved with the study, said “Research in these lesser-known basins is critically important for meaningful interpretation of the Permian fossil record. Our understanding of the Permian and the mass extinction that ended it depends on discovery of more fossils like the beautifully bizarre Bunostegos.”

Much of what was once central Pangea remains to be explored by paleontologists. “It is important to continue research in these under-explored areas,” said Tsuji. “The study of fossils from places like northern Niger paints a more comprehensive picture of the ecosystem during the Permian era.”

Two Mutations Triggered an Evolutionary Leap 500 Million Years Ago

Evolution, it seems, sometimes jumps instead of crawls. A research team led by a University of Chicago scientist has discovered two key mutations that sparked a hormonal revolution 500 million years ago.

In a feat of “molecular time travel,” the researchers resurrected and analyzed the functions of the ancestors of genes that play key roles in modern human reproduction, development, immunity and cancer. By re-creating the same DNA changes that occurred during those genes’ ancient history, the team showed that two mutations set the stage for hormones like estrogen, testosterone and cortisol to take on their crucial present-day roles.

“Changes in just two letters of the genetic code in our deep evolutionary past caused a massive shift in the function of one protein and set in motion the evolution of our present-day hormonal and reproductive systems,” said Joe Thornton, PhD, professor of human genetics and ecology & evolution at the University of Chicago, who led the study.

“If those two mutations had not happened, our bodies today would have to use different mechanisms to regulate pregnancy, libido, the response to stress, kidney function, inflammation, and the development of male and female characteristics at puberty,” Thornton said.

The findings were published online June 24 in the Proceedings of the National Academy of Sciences.

Understanding how the genetic code of a protein determines its functions would allow biochemists to better design drugs and predict the effects of mutations on disease. Thornton said the discovery shows how evolutionary analysis of proteins’ histories can advance this goal, Before the group’s work, it was not previously known how the various steroid receptors in modern species distinguish estrogens from other hormones.

DNA model. (Credit: © Mopic / Fotolia)

DNA model. (Credit: © Mopic / Fotolia)

The team, which included researchers from the University of Oregon, Emory University and the Scripps Research Institute, studied the evolution of a family of proteins called steroid hormone receptors, which mediate the effects of hormones on reproduction, development and physiology. Without receptor proteins, these hormones cannot affect the body’s cells.

Thornton’s group traced how the ancestor of the entire receptor family — which recognized only estrogens — evolved into descendant proteins capable of recognizing other steroid hormones, such as testosterone, progesterone and the stress hormone cortisol.

To do so, the group used a gene “resurrection” strategy. They first inferred the genetic sequences of ancient receptor proteins, using computational methods to work their way back up the tree of life from a database of hundreds of present-day receptor sequences. They then biochemically synthesized these ancient DNA sequences and used molecular assays to determine the receptors’ sensitivity to various hormones.

Thornton’s team narrowed down the time range during which the capacity to recognize non-estrogen steroids evolved, to a period about 500 million years ago, before the dawn of vertebrate animals on Earth. They then identified the most important mutations that occurred during that interval by introducing them into the reconstructed ancestral proteins. By measuring how the mutations affected the receptor’s structure and function, the team could re-create ancient molecular evolution in the laboratory.

They found that just two changes in the ancient receptor’s gene sequence caused a 70,000-fold shift in preference away from estrogens toward other steroid hormones. The researchers also used biophysical techniques to identify the precise atomic-level mechanisms by which the mutations affected the protein’s functions. Although only a few atoms in the protein were changed, this radically rewired the network of interactions between the receptor and the hormone, leading to a massive change in function.

“Our findings show that new molecular functions can evolve by sudden large leaps due to a few tiny changes in the genetic code,” Thornton said. He pointed out that, along with the two key changes in the receptor, additional mutations, the precise effects of which are not yet known, were necessary for the full effects of hormone signaling on the body to evolve.