mammoths back to life !

An international team of researchers has sequenced the nearly complete genome of two Siberian woolly mammoths — revealing the most complete picture to date — including new information about the species’ evolutionary history and the conditions that led to its mass extinction at the end of the Ice Age.

“This discovery means that recreating extinct species is a much more real possibility, one we could in theory realize within decades,” says evolutionary geneticist Hendrik Poinar, director of the Ancient DNA Centre at McMaster University and a researcher at the Institute for Infectious Disease Research, the senior Canadian scientist on the project.

“With a complete genome and this kind of data, we can now begin to understand what made a mammoth a mammoth — when compared to an elephant — and some of the underlying causes of their extinction which is an exceptionally difficult and complex puzzle to solve,” he says.

While scientists have long argued that climate change and human hunting were major factors behind the mammoth’s extinction, the new data suggests multiple factors were at play over their long evolutionary history.

Researchers from McMaster, Harvard Medical School, the Swedish Museum of Natural History, Stockholm University and others produced high-quality genomes from specimens taken from the remains of two male woolly mammoths, which lived about 40,000 years apart.

One had lived in northeastern Siberia and is estimated to be nearly 45,000 years old. The other -believed to be from one of the last surviving mammoth populations — lived approximately 4,300 years ago on Russia’s Wrangel Island, located in the Arctic Ocean.

“We found that the genome from one of the world’s last mammoths displayed low genetic variation and a signature consistent with inbreeding, likely due to the small number of mammoths that managed to survive on Wrangel Island during the last 5,000 years of the species’ existence,” says Love Dalén, an associate professor of Bioinformatics and Genetics at the Swedish Museum of Natural History.

Tip of the trunk of a baby mammoth. Credit: Love Dalen

Tip of the trunk of a baby mammoth.
Credit: Love Dalen

Scientists used sophisticated technology to tease bits and pieces of highly fragmented DNA from the ancient specimens, which they then used to sequence the genomes. Through careful analysis, they determined the animal populations had suffered and recovered from a significant setback roughly 250,000 to 300,000 years ago. However, say researchers, another severe decline occurred in the final days of the Ice Age, marking the end.

“The dates on these current samples suggest that when Egyptians were building pyramids, there were still mammoths living on these islands,” says Poinar. “Having this quality of data can help with our understanding of the evolutionary dynamics of elephants in general and possible efforts at de-extinction.”

The latest research is the continuation of the pioneering work Poinar and his team began in 2006, when they first mapped a partial mammoth genome, using DNA extracted from carcasses found in permafrost in the Yukon and Siberia.

The study is published online in the Cell Press journal Current Biology.

Sexual Dimorphism in the Plated Dinosaur Stegosaurus

Abstract

Conclusive evidence for sexual dimorphism in non-avian dinosaurs has been elusive. Here it is shown that dimorphism in the shape of the dermal plates of Stegosaurus mjosi (Upper Jurassic, western USA) does not result from non-sex-related individual, interspecific, or ontogenetic variation and is most likely a sexually dimorphic feature. One morph possessed wide, oval plates 45% larger in surface area than the tall, narrow plates of the other morph. Intermediate morphologies are lacking as principal component analysis supports marked size- and shape-based dimorphism. In contrast, many non-sex-related individual variations are expected to show intermediate morphologies. Taphonomy of a new quarry in Montana (JRDI 5ES Quarry) shows that at least five individuals were buried in a single horizon and were not brought together by water or scavenger transportation. This new site demonstrates co-existence, and possibly suggests sociality, between two morphs that only show dimorphism in their plates. Without evidence for niche partitioning, it is unlikely that the two morphs represent different species. Histology of the new specimens in combination with studies on previous specimens indicates that both morphs occur in fully-grown individuals. Therefore, the dimorphism is not a result of ontogenetic change. Furthermore, the two morphs of plates do not simply come from different positions on the back of a single individual. Plates from all positions on the body can be classified as one of the two morphs, and previously discovered, isolated specimens possess only one morph of plates. Based on the seemingly display-oriented morphology of plates, female mate choice was likely the driving evolutionary mechanism rather than male-male competition. Dinosaur ornamentation possibly served similar functions to the ornamentation of modern species. Comparisons to ornamentation involved in sexual selection of extant species, such as the horns of bovids, may be appropriate in predicting the function of some dinosaur ornamentation.

Oldest fossils controversy resolved

New analysis of world-famous 3.46 billion-year-old rocks by researchers from the University of Bristol, the University of Oxford and UWA (the University of Western Australia) is set to finally resolve a long running evolutionary controversy.

The new research, published this week in Proceedings of the National Academy of Sciences, shows that structures once thought to be Earth’s oldest microfossils do not compare with younger fossil candidates but have, instead, the character of peculiarly shaped minerals.In 1993, US scientist Bill Schopf described tiny carbon-rich filaments within the 3.46 billion-year-old Apex chert (fine-grained sedimentary rock) from the Pilbara region of Western Australia, which he likened to certain forms of bacteria, including cyanobacteria.

These ‘Apex chert microfossils’ — between 0.5 and 20 micrometres wide — soon became enshrined in textbooks, museum displays, popular science books and online reference guides as the earliest evidence for life on Earth. In 1996, these structures were even used to test and help refute the case against ‘microfossils’ in the Martian meteorite ALH 84001.

Even so, their curious colour and complexity gave rise to some early questions. Gravest doubts emerged in 2002, when a team led by Oxford’s Professor Martin Brasier (co-author of this current study) revealed that the host rock was not part of a simple sedimentary unit but rather came from a complex, high-temperature hydrothermal vein, with evidence for multiple episodes of subsurface fluid flow over a long time. His team advanced an alternative hypothesis, stating that these curious structures were not true microfossils but pseudofossils formed by the redistribution of carbon around mineral grains during these hydrothermal events.

Although other research teams have since supported the hydrothermal context of Professor Brasier, the ‘Apex microfossil’ debate has remained hard to resolve because scientific instrumentation has only recently reached the level of resolution needed to map both chemical composition and morphology of these ‘microfossils’ at the sub-micrometre scale.

Now Dr David Wacey, a Marie Curie Fellow in Bristol’s School of Earth Sciences, in collaboration with the late Professor Brasier, has come up with new high-spatial resolution data that clearly demonstrate that the ‘Apex chert microfossils’ comprise stacks of plate-like clay minerals arranged into branched and tapered worm-like chains. Carbon was then absorbed onto the edges of these minerals during the circulation of hydrothermal fluids, giving a false impression of carbon-rich cell-like walls.

 

Dr Wacey and team used transmission electron microscopy to examine ultrathin slices of ‘microfossil’ candidates, to build up nanoscale maps of their size, shape, mineral chemistry and distribution of carbon.

Dr Wacey said: “It soon became clear that the distribution of carbon was unlike anything seen in authentic microfossils. A false appearance of cellular compartments is given by multiple plates of clay minerals having a chemistry entirely compatible with a high temperature hydrothermal setting.

“We studied a range of authentic microfossils using the same transmission electron microscopy technique and in all cases these reveal coherent, rounded envelopes of carbon having dimensions consistent with their origin from cell walls and sheaths. At high spatial resolution, the Apex ‘microfossils’ lack all evidence for coherent, rounded walls. Instead, they have a complex, incoherent spiky morphology, evidently formed by filaments of clay crystals coated with iron and carbon.”

Before his death Professor Brasier commented: “This research should, at long last, provide a closing chapter for the ‘Apex microfossil’ debate. Such discussions have encouraged us to refine both the questions and techniques needed to search for life remote in time and space, including signals from Mars or beyond. It is hoped that textbooks and websites will now focus upon recent and more robust discoveries of microfossils of a similar age from Western Australia, also examined by us in the same article.”

University of Bristol. “Oldest fossils controversy resolved.” ScienceDaily. ScienceDaily, 20 April 2015. <www.sciencedaily.com/releases/2015/04/150420154823.htm>.

WFS : Ariyalur Fossils : Rastellum Carinatum

Rastellum (Arctostrea) carinatum (Lamarck)

This upper Cretaceous oyster is characterized by long and curved valves. Stout ribs cross the upper valve. The sample is obtained from Ariyalur/Dalmiapuram area. samples collected by Riffin T Sajeev and Russel T Sajeev from World Fossil society.

The Rastellum genus of oysters lived between 161 to 65 million years ago during the Jurassic and Cretaceous periods. Occurring in many locations across the globe, the Rastellum oyster species inhabited shallow marine environments such as lagoons, bioherms and biostromes, and peritidal areas exposed to air and more harsh extreme variations of temperature, salinity, and storm activity, and also lived in shallow subtidal areas, above, on, and below reefs, coastal areas, and offshore shelves along continents. Rastellum oysters would remain stationary, attached to the surfaces of rocks, pilings, and to the sea floor itself, where they would filter feed on small foods suspended in the water column. This specimen is Rastellum carinatum, a species which seems to have occurred from 144 to 65 million years ago, evidently becoming extinct during the same event that ended the reign of the dinosaurs.

Phylum :
Mollusca
Class :
Bivalvia
Family :
Ostreidae
Genus :
Rastellum (Arctostrea)
Species :
carinatum (Lamarck)
Stage :
Cenomanian
Rastellum Carrinata from Ariyalur/Dalmiapuram : Photo copyright@ WFS,Riffin T Sajeev&Russel T Sajeev

Rastellum Carrinata from Ariyalur/Dalmiapuram : Photo copyright@ WFS,Riffin T Sajeev&Russel T Sajeev

A new birth story for mosasaurs discovered.

They weren’t in the delivery room, but researchers at Yale University and the University of Toronto have discovered a new birth story for a gigantic marine lizard that once roamed the oceans.

Thanks to recently identified specimens at the Yale Peabody Museum of Natural History, paleontologists now believe that mighty mosasaurs — which could grow to 50 feet long — gave birth to their young in the open ocean, not on or near shore.The findings answer long-held questions about the initial environment of an iconic predator that lived during the time of the dinosaurs. Mosasaurs populated most waters of the Earth before their extinction 65 million years ago.

“Mosasaurs are among the best-studied groups of Mesozoic vertebrate animals, but evidence regarding how they were born and what baby mosasaur ecology was like has historically been elusive,” said Daniel Field, lead author of a study published online April 10 in the journal Palaeontology. Field is a doctoral candidate in the lab of Jacques Gauthier in Yale’s Department of Geology and Geophysics.

Giant sea lizards in the age of dinosaurs: A new beginning for baby mosasaurs

Giant sea lizards in the age of dinosaurs: A new beginning for baby mosasaurs

Credit: Illustration by Julius T. Csotonyi

In their study, Field and his colleagues describe the youngest mosasaur specimens ever found. Field had come across the fossils in the Yale Peabody Museum’s extensive collections. “These specimens were collected over 100 years ago,” Field said. “They had previously been thought to belong to ancient marine birds.”

Field and Aaron LeBlanc, a doctoral candidate at the University of Toronto at Mississauga, concluded that the specimens showed a variety of jaw and teeth features that are only found in mosasaurs. Also, the fossils were found in deposits in the open ocean.

“Really, the only bird-like feature of the specimens is their small size,” LeBlanc said. “Contrary to classic theories, these findings suggest that mosasaurs did not lay eggs on beaches and that newborn mosasaurs likely did not live in sheltered nearshore nurseries.”

Llallawavis scagliai: fossil gives clue of ancient bird sound

A new species of South American fossil terror bird called Llallawavis scagliai (“Scaglia’s Magnificent Bird”) is shedding light on the diversity of the group and how these giant extinct predators interacted with their environment. The new species, described in the latest issue of the Journal of Vertebrate Paleontology, is the most complete terror bird ever discovered, with more than 90% of the skeleton exquisitely preserved. The new specimen also reveals details of anatomy that rarely preserve in the fossil record, including the auditory region of the skull, voice box, complete trachea, bones for focussing the eye, and the complete palate, allowing an unprecedented understanding of the sensory capabilities of these extinct predatory birds.

Llallawavis scagliai: Image credit: H. Santiago Druetta.

Llallawavis scagliai: Image credit: H. Santiago Druetta.

“The mean hearing estimated for this terror bird was below the average for living birds,” said Dr. Federico “Dino” Degrange, lead author of the study from the Centro de Investigaciones en Ciencias de la Tierra (CICTERRA), CONICET and the Universidad Nacional de Córdoba, Argentina. “This seems to indicate that Llallawavis may have had a narrow, low vocalization frequency range, presumably used for intraspecific acoustic communication or prey detection.” This is the first time that the structures which indicate hearing sensitivity have been reconstructed for any terror bird, and they may help explain the evolution, behavior, and ecology of this group of fossil birds.

 

This is a skeleton of Llallawavis scagliai on display at the Museo Municipal de Ciencias Naturales Lorenzo Scaglia, Mar del Plata. For more information, see: www.facebook.com/paleontologiamdp Credit: M. Taglioretti and F. Scaglia

This is a skeleton of Llallawavis scagliai on display at the Museo Municipal de Ciencias Naturales Lorenzo Scaglia, Mar del Plata.         For more information, see: www.facebook.com/paleontologiamdp
Credit: M. Taglioretti and F. Scaglia

Terror birds, or phorusracids as they are known scientifically, were carnivorous flightless birds up to 3 meters (10 ft) in height with tall hooked beaks. These birds were the predominant predators during the Cenozoic Age in South America and certainly one of the most striking groups that lived during that time. “The discovery of this new species provides new insights for studying the anatomy and phylogeny of phorusrhacids and a better understanding of this group’s diversification,” said Dr. Claudia Tambussi, also of CICTERRA and one of the co-authors of the study. The new species stood 4 feet tall and lived in Argentina approximately 3.5 million years ago in the Pliocene Epoch, towards the end of the reign of the group.

“The discovery of this species reveals that terror birds were more diverse in the Pliocene than previously thought. It will allow us to review the hypothesis about the decline and extinction of this fascinating group of birds” said Degrange.


WFS: Ariyalur Fossils : INOCERAMUS

Inoceramus Fossil from Ariyalur/Dalmiapuram : Copyright @ World Fossil Society (WFS),Riffin T Sajeev & Russel T Sajeev

                     Inoceramus Fossil from Ariyalur/Dalmiapuram                                          Copyright @ World Fossil Society (WFS),Riffin T Sajeev & Russel T Sajeev

Some species of clams (bivalves) grew to giant size in the late Cretaceous, attaining diameters of four feet or more. In cross section, these shells are composed of prismatic (calcitic) crystals. The inner, nacreous (Mother of Pearl) layer of the shell (composed of aragonite) was usually dissolved during fossilization and the outer portion is usually covered with colonies of oysters and other invertebrates. Pearls are occasionally found pressed into the Inoceramid shell. According to Sowerby 1823, Inoceramus means “fibrous shell,” describing the prisms that are visible on the edge of shell fragments. Inoceramus cuvieri was the first species of Inoceramus that was formally described by Sowerby (1814). Several species are found in the Late Cretaceous bed in Ariyalur and dalmiapuram in India. Fossil collectors Riffin T Sajeev and Russel T Sajeev have enough samples of the same from Ariyalur and Dalmiapuram formations.

As noted by Brown (1940) and Kauffman (1990), sometimes small round nodules are found attached to inoceramid shells. They are the remains of pearls that were fossilized along with the clam shell. The nacre or “mother of pearl” luster is not preserved in inoceramid pearls. This is because the pearly, nacreous color associated with true pearls is made up of a mineral called aragonite. Due to the environment Inoceramid shells and pearls have lost the thin inner pearly aragonite layer, and are solely composed of calcite. This also means that some kinds of shells, like those of ammonites, were not preserved because they are composed entirely of aragonite.

Phylum Mollusca Cuvier, 1795
Class Bivalvia Linné, 1758
The terminology follows that of the glossary in the Treatise on Invertebrate paleontology, part N.
Subclass Pteriomorphia Beurlen, 1944
Order Pterioida Newell, 1965
Suborder Pteriina Newell, 1965
Superfamily Ambonychiacea Miller, 1877
Family Inoceramidae Giebel, 1852
Genus Inoceramus J. Sowerby, 1814

Ancient seashell coloration patterns revealed using ultraviolet light

Nearly 30 ancient seashell species coloration patterns were revealed using ultraviolet (UV) light, according to a study published April 1, 2015 in the open-access journal PLOS ONE by Jonathan Hendricks from San Jose State University, CA.

Unlike their modern relatives, the 4.8-6.6 million-year-old fossil cone shells often appear white and without a pattern when viewed in regular visible light. By placing these fossils under ultraviolet (UV) light, the organic matter remaining in the shells fluoresces, revealing the original coloration patterns of the once living animals. However, it remains unclear which compounds in the shell matrix are emitting light when exposed to UV rays.

Three of the newly described species, Conus carlottae (left column), Conus garrisoni (middle column), and Conus bellacoensis (right column) photographed under regular light (top row) and ultraviolet light (middle row). The brightly fluorescing regions revealed under ultraviolet light would have been darkly pigmented in life (bottom row). Credit: Jonathan Hendricks; CC-BY

Three of the newly described species, Conus carlottae (left column), Conus garrisoni (middle column), and Conus bellacoensis (right column) photographed under regular light (top row) and ultraviolet light (middle row). The brightly fluorescing regions revealed under ultraviolet light would have been darkly pigmented in life (bottom row).
Credit: Jonathan Hendricks; CC-BY

Using this technique, the author of this study was able to view and document the coloration patterns of 28 different cone shell species from the northern Dominican Republic, 13 of which appear to be new species. Determining the coloration patterns of the ancient shells may be important for understanding their relationships to modern species.

Hendricks compared the preserved patterns with those of modern Caribbean cone snail shells and found that many of the fossils showed similar patterns, indicating that some modern species belong to lineages that survived in the Caribbean for millions of years. According to the author, a striking exception in this study was the newly described species Conus carlottae, which has a shell covered by large polka dots, a pattern that is apparently extinct among modern cone snails.

WFS : Ariyalur Cretaceous fossils : Arctostrea

Rastellum Carinata : copy right: Riffin T Sajeev & Russel T sajeev,World Fossil Societyk

Rastellum Carinatum                                   Photo  Copyright: Riffin T Sajeev & Russel T sajeev,World Fossil Society

This is a Cretaceous aged fossil oyster of the species Rastellum carinatum from Dalmiapuram. It has wide, angled ribs that have led to it being called the ‘denture clam’. The zig-zag join between the two shells stopped coarse dirt and debris entering the shell and damaging its soft body. Like modern oysters it lived in shallow coastal waters including the intertidal zone (the area between high and low tide) and fed on food particles that it filtered out of the sea water.

 

Paralycoptera: first dinosaur-era fish from HongKong

A ~147 million-year-old Jurassic-aged osteoglossoid osteoglossomorph fish Paralycoptera from outcrops at Lai Chi Chong has been described. This fossil represents the first dinosaur-era fish — as well as vertebrate — from Hong Kong to be identified.

The fossil was rediscovered in the collections of the Stephen Hui Geological Museum by Mr. Edison Tse Tze-kei, graduate of the Class of 2014, Department of Earth Sciences, Faculty of Science, the University of Hong Kong (HKU). Mr. Tse studied the specimen during his HKU Faculty of Science Summer Research Fellowship and Earth Sciences Major final-year project, under the supervision of Dr. Michael Pittman who leads the University’s Vertebrate Palaeontology Laboratory and is an expert on dinosaur evolution, as well as Professor Chang Mee-mann, an Academician of the Chinese Academy of Sciences from the Institute of Vertebrate Paleontology and Paleoanthropology (IVPP) in Beijing. A paper on this study has recently been published in the open-access journal PeerJ, demonstrating international recognition of the outstanding ability of HKU undergraduate students in conducting scientific research.

The fossil consists of the posterior portion of a small, about 4cm long osteoglossoid osteoglossomorph fish from the genus Paralycoptera, and was collected at Lai Chi Chong, Tolo Channel, from rocks that have been previously radiometrically dated to 146.6 ± 0.2 million years old (Tithonian stage of the Late Jurassic). Paralycoptera is a typical member of the Mesoclupea fish fauna of Southeast China. Its discovery in Hong Kong extends the geographic range of the genus — and potentially of the Mesoclupea fish fauna — by about 700 km further south. The Jurassic-age of the Hong Kong specimen extends the temporal range of the genus about 40 million years back in time because all mainland specimens are currently known from the Early Cretaceous.

Hong Kong’s first dinosaur-era fish - a specimen of the Chinese osteoglossoid osteoglossomorph fish Paralycoptera. Credit: Copyright IVPP

Hong Kong’s first dinosaur-era fish – a specimen of the Chinese osteoglossoid osteoglossomorph fish Paralycoptera.
Credit: Copyright IVPP

Hong Kong’s last major vertebrate fossil identification was the discovery of a ~370 million-year-old early fish (Devonian-aged placoderm fish) by Mr. Lee Cho-min 35 years ago on the north shore of Tolo Channel, Hong Kong, almost directly opposite to Lai Chi Chong.

When asked about the impact of the new specimen towards our broader knowledge of osteoglossomorph fish, Research Assistant Professor Dr. Pittman replied, ‘The fossil’s Late Jurassic age also adds support to the hypothesis that osteoglossomorph fish originated on the portion of the ancient supercontinent of Pangaea (which broke apart about 200 million years ago) that is now East Asia.’

This study improves our understanding of the habitat of Paralycoptera, based on the geological information preserved at Lai Chi Chong, a beautiful tidal rock outcrop within the Hong Kong Global Geopark of China. Elaborating on this, Mr. Tse said, ‘Our Paralycoptera specimen appears to have lived in a tropical-subtropical freshwater lake that was periodically subjected to catastrophic volcanic eruptions and earthquakes.’

Dr Pittman said that undergraduate students worldwide typically do not publish peer-reviewed research, so Edison’s valuable contribution towards Hong Kong palaeontology is a credit to him and the research ability of HKU students. The detailed identification and description of the specimen was also aided by Professor Mee-mann Chang, a global expert on Chinese fossil fish.

Journal Reference:

  1. Tze-Kei Tse, Michael Pittman, Mee-mann Chang. A specimen ofParalycopteraChang & Chou 1977 (Teleostei: Osteoglossoidei) from Hong Kong (China) with a potential Late Jurassic age that extends the temporal and geographical range of the genus. PeerJ, 2015; 3: e865 DOI: 10.7717/peerj.865